Wednesday, March 13, 2013

Bioinformatics 101: Short Read Aligners

General Purpose Aligners:

  • BWA
  • Bowtie
  • Novoalign
    • commercial software covering a variety of alignment needs (RNA-Seq, miRNA-Seq, DNA-Seq, BS-Seq, etc.)
    • some functionality is also available in the free version

RNA-Seq Aligners:

BS-Seq Aligners:

Sequencing Technology Tutorials:

No comments:

Post a Comment

Creative Commons License
My Biomedical Informatics Blog by Charles Warden is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 United States License.