Wednesday, March 13, 2013

Bioinformatics 101: Pathway Analysis

Gene List Enrichment Tools (Requires Differenital Expression Analysis):

Other Systems-Level Analysis Tools (No Upstream Filtering Necessary):


  1. Very nice resource, thank you very much. I'll recommend it to my colleagues.

    For Gene Expression analysis, there is also a tool in the Reactome database:

  2. Good suggestion! I will add a link in this section for Reactome!

  3. Very informative summary!

    For NGS analysis you could mention FIDEA (
    The FIDEA server allows the user to directly input the results of a differential expression analysis and it performs
    the enrichment analysis considering the upregulated and downregulated genes both together and separately.

  4. Thanks for the suggestion - and congrats on your publication in NAR!

  5. Thank you for the congrats and the insertion!
    A little thing, the correct link for FIDEA is (and not
    Thanks again.


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