Wednesday, March 13, 2013

Bioinformatics 101: Pathway Analysis

Gene List Enrichment Tools (Requires Differenital Expression Analysis):


Other Systems-Level Analysis Tools (No Upstream Filtering Necessary):

5 comments:

  1. Very nice resource, thank you very much. I'll recommend it to my colleagues.

    For Gene Expression analysis, there is also a tool in the Reactome database: http://www.reactome.org/ReactomeGWT/entrypoint.html#ExpressionDataUploadPage

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  2. Good suggestion! I will add a link in this section for Reactome!

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  3. Very informative summary!

    For NGS analysis you could mention FIDEA (http://www.biocomputing.it/fidea)
    The FIDEA server allows the user to directly input the results of a differential expression analysis and it performs
    the enrichment analysis considering the upregulated and downregulated genes both together and separately.

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  4. Thanks for the suggestion - and congrats on your publication in NAR!

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  5. Thank you for the congrats and the insertion!
    A little thing, the correct link for FIDEA is http://www.biocomputing.it/fidea (and not cassandra.med.uniroma1.it/fidea).
    Thanks again.

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